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<h1 class="epydoc">Source Code for <a href="dexen.user.schemas.cubes.tasks.libs.visualizer-module.html">Module dexen.user.schemas.cubes.tasks.libs.visualizer</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt>  <tt class="py-line"> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">operator</tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt>  <tt class="py-line"> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">Image</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">ImageDraw</tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt>  <tt class="py-line"><tt class="py-comment">#from matplotlib import pyplot</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt>  <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package dexen.user.schemas.cubes.tasks=dexen.user.schemas.cubes.tasks-module.html"><a title="dexen.user.schemas.cubes.tasks" class="py-name" href="#" onclick="return doclink('link-0', 'tasks', 'link-0');">tasks</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Package dexen.user.schemas.cubes.tasks.libs=dexen.user.schemas.cubes.tasks.libs-module.html"><a title="dexen.user.schemas.cubes.tasks.libs" class="py-name" href="#" onclick="return doclink('link-1', 'libs', 'link-1');">libs</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module dexen.user.schemas.cubes.tasks.libs.constants=dexen.user.schemas.cubes.tasks.libs.constants-module.html"><a title="dexen.user.schemas.cubes.tasks.libs.constants" class="py-name" href="#" onclick="return doclink('link-2', 'constants', 'link-2');">constants</a></tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt>  <tt class="py-line"> </tt>
<a name="RectangleVisualizer"></a><div id="RectangleVisualizer-def"><a name="L10"></a><tt class="py-lineno">10</tt> <a class="py-toggle" href="#" id="RectangleVisualizer-toggle" onclick="return toggle('RectangleVisualizer');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html">RectangleVisualizer</a><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="RectangleVisualizer-expanded"><a name="RectangleVisualizer.__init__"></a><div id="RectangleVisualizer.__init__-def"><a name="L11"></a><tt class="py-lineno">11</tt> <a class="py-toggle" href="#" id="RectangleVisualizer.__init__-toggle" onclick="return toggle('RectangleVisualizer.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">width</tt><tt class="py-op">,</tt> <tt class="py-param">height</tt><tt class="py-op">,</tt> <tt class="py-param">boxes</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer.__init__-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="RectangleVisualizer.__init__-expanded"><a name="L12"></a><tt class="py-lineno">12</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">width</tt> <tt class="py-op">=</tt> <tt class="py-name">width</tt> </tt>
<a name="L13"></a><tt class="py-lineno">13</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">height</tt> <tt class="py-op">=</tt> <tt class="py-name">height</tt> </tt>
<a name="L14"></a><tt class="py-lineno">14</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">boxes</tt> <tt class="py-op">=</tt> <tt class="py-name">boxes</tt> </tt>
<a name="L15"></a><tt class="py-lineno">15</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">Image</tt><tt class="py-op">.</tt><tt class="py-name">new</tt><tt class="py-op">(</tt><tt class="py-string">"RGB"</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">width</tt><tt class="py-op">,</tt> <tt class="py-name">height</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L16"></a><tt class="py-lineno">16</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">draw</tt> <tt class="py-op">=</tt> <tt class="py-name">ImageDraw</tt><tt class="py-op">.</tt><tt class="py-name">Draw</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">image</tt><tt class="py-op">)</tt> </tt>
<a name="L17"></a><tt class="py-lineno">17</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">paste</tt><tt class="py-op">(</tt><tt class="py-string">"#ffffff"</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-name">width</tt><tt class="py-op">,</tt><tt class="py-name">height</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div><a name="L18"></a><tt class="py-lineno">18</tt>  <tt class="py-line">         </tt>
<a name="RectangleVisualizer.draw_box"></a><div id="RectangleVisualizer.draw_box-def"><a name="L19"></a><tt class="py-lineno">19</tt> <a class="py-toggle" href="#" id="RectangleVisualizer.draw_box-toggle" onclick="return toggle('RectangleVisualizer.draw_box');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#draw_box">draw_box</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">x</tt><tt class="py-op">,</tt> <tt class="py-param">y</tt><tt class="py-op">,</tt> <tt class="py-param">box_no</tt><tt class="py-op">,</tt> <tt class="py-param">scale</tt><tt class="py-op">,</tt> <tt class="py-param">orient</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer.draw_box-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="RectangleVisualizer.draw_box-expanded"><a name="L20"></a><tt class="py-lineno">20</tt>  <tt class="py-line">        <tt class="py-comment">#x = x * scale['x']</tt> </tt>
<a name="L21"></a><tt class="py-lineno">21</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#y = y * scale['y']</tt> </tt>
<a name="L22"></a><tt class="py-lineno">22</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-name">ss</tt> <tt class="py-op">=</tt> <tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-name">scale</tt><tt class="py-op">[</tt><tt class="py-string">'x'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">scale</tt><tt class="py-op">[</tt><tt class="py-string">'y'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L23"></a><tt class="py-lineno">23</tt>  <tt class="py-line">        <tt class="py-name">x</tt> <tt class="py-op">=</tt> <tt class="py-name">x</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt> </tt>
<a name="L24"></a><tt class="py-lineno">24</tt>  <tt class="py-line">        <tt class="py-name">y</tt> <tt class="py-op">=</tt> <tt class="py-name">y</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt> </tt>
<a name="L25"></a><tt class="py-lineno">25</tt>  <tt class="py-line">        <tt class="py-comment">#w = 0</tt> </tt>
<a name="L26"></a><tt class="py-lineno">26</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#h = 0    </tt> </tt>
<a name="L27"></a><tt class="py-lineno">27</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-keyword">if</tt> <tt class="py-name">orient</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L28"></a><tt class="py-lineno">28</tt>  <tt class="py-line">            <tt class="py-name">w</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">boxes</tt><tt class="py-op">[</tt><tt class="py-name">box_no</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">'w'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt> </tt>
<a name="L29"></a><tt class="py-lineno">29</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">boxes</tt><tt class="py-op">[</tt><tt class="py-name">box_no</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">'h'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt> </tt>
<a name="L30"></a><tt class="py-lineno">30</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L31"></a><tt class="py-lineno">31</tt>  <tt class="py-line">            <tt class="py-name">w</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">boxes</tt><tt class="py-op">[</tt><tt class="py-name">box_no</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">'h'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt>             </tt>
<a name="L32"></a><tt class="py-lineno">32</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">boxes</tt><tt class="py-op">[</tt><tt class="py-name">box_no</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">'w'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">ss</tt>     </tt>
<a name="L33"></a><tt class="py-lineno">33</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">draw</tt><tt class="py-op">.</tt><tt class="py-name">rectangle</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">x</tt><tt class="py-op">,</tt><tt class="py-name">y</tt><tt class="py-op">,</tt><tt class="py-name">x</tt><tt class="py-op">+</tt><tt class="py-name">w</tt><tt class="py-op">,</tt><tt class="py-name">y</tt><tt class="py-op">+</tt><tt class="py-name">h</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">"#ff0000"</tt><tt class="py-op">,</tt> <tt class="py-string">"#000000"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L34"></a><tt class="py-lineno">34</tt>  <tt class="py-line">        <tt class="py-comment">#self.image = self.image.transpose(Image.FLIP_TOP_BOTTOM)</tt> </tt>
<a name="L35"></a><tt class="py-lineno">35</tt>  <tt class="py-line"><tt class="py-comment"></tt>        <tt class="py-comment">#self.image.resize(, resample)</tt> </tt>
<a name="L36"></a><tt class="py-lineno">36</tt>  <tt class="py-line"><tt class="py-comment"></tt>         </tt>
<a name="RectangleVisualizer.draw_individual"></a><div id="RectangleVisualizer.draw_individual-def"><a name="L37"></a><tt class="py-lineno">37</tt> <a class="py-toggle" href="#" id="RectangleVisualizer.draw_individual-toggle" onclick="return toggle('RectangleVisualizer.draw_individual');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#draw_individual">draw_individual</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">individual</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer.draw_individual-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="RectangleVisualizer.draw_individual-expanded"><a name="L38"></a><tt class="py-lineno">38</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt class="py-name">i</tt><tt class="py-op">,</tt> <tt class="py-name">box</tt> <tt class="py-keyword">in</tt> <tt class="py-name">enumerate</tt><tt class="py-op">(</tt><tt class="py-name">individual</tt><tt class="py-op">[</tt><tt id="link-3" class="py-name"><a title="dexen.user.schemas.cubes.tasks.libs.constants" class="py-name" href="#" onclick="return doclink('link-3', 'constants', 'link-2');">constants</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Variable dexen.user.schemas.cubes.tasks.libs.constants.PHENOTYPE=dexen.user.schemas.cubes.tasks.libs.constants-module.html#PHENOTYPE"><a title="dexen.user.schemas.cubes.tasks.libs.constants.PHENOTYPE" class="py-name" href="#" onclick="return doclink('link-4', 'PHENOTYPE', 'link-4');">PHENOTYPE</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L39"></a><tt class="py-lineno">39</tt>  <tt class="py-line">            <tt class="py-name">scale</tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L40"></a><tt class="py-lineno">40</tt>  <tt class="py-line">            <tt class="py-name">scale</tt><tt class="py-op">[</tt><tt class="py-string">'x'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">width</tt> <tt class="py-op">/</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">individual</tt><tt class="py-op">[</tt><tt id="link-5" class="py-name"><a title="dexen.user.schemas.cubes.tasks.libs.constants" class="py-name" href="#" onclick="return doclink('link-5', 'constants', 'link-2');">constants</a></tt><tt class="py-op">.</tt><tt class="py-name">WIDTH</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L41"></a><tt class="py-lineno">41</tt>  <tt class="py-line">            <tt class="py-name">scale</tt><tt class="py-op">[</tt><tt class="py-string">'y'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">height</tt> <tt class="py-op">/</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">individual</tt><tt class="py-op">[</tt><tt id="link-6" class="py-name"><a title="dexen.user.schemas.cubes.tasks.libs.constants" class="py-name" href="#" onclick="return doclink('link-6', 'constants', 'link-2');">constants</a></tt><tt class="py-op">.</tt><tt class="py-name">HEIGHT</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L42"></a><tt class="py-lineno">42</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer.draw_box()=dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#draw_box"><a title="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer.draw_box" class="py-name" href="#" onclick="return doclink('link-7', 'draw_box', 'link-7');">draw_box</a></tt><tt class="py-op">(</tt><tt class="py-name">box</tt><tt class="py-op">[</tt><tt class="py-string">'x'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">box</tt><tt class="py-op">[</tt><tt class="py-string">'y'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">i</tt><tt class="py-op">,</tt> <tt class="py-name">scale</tt><tt class="py-op">,</tt> <tt class="py-name">individual</tt><tt class="py-op">[</tt><tt id="link-8" class="py-name"><a title="dexen.user.schemas.cubes.tasks.libs.constants" class="py-name" href="#" onclick="return doclink('link-8', 'constants', 'link-2');">constants</a></tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable dexen.user.schemas.cubes.tasks.libs.constants.GENOTYPE=dexen.user.schemas.cubes.tasks.libs.constants-module.html#GENOTYPE"><a title="dexen.user.schemas.cubes.tasks.libs.constants.GENOTYPE" class="py-name" href="#" onclick="return doclink('link-9', 'GENOTYPE', 'link-9');">GENOTYPE</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-string">'orient'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">i</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
</div><a name="L43"></a><tt class="py-lineno">43</tt>  <tt class="py-line">             </tt>
<a name="RectangleVisualizer.save_to_file"></a><div id="RectangleVisualizer.save_to_file-def"><a name="L44"></a><tt class="py-lineno">44</tt> <a class="py-toggle" href="#" id="RectangleVisualizer.save_to_file-toggle" onclick="return toggle('RectangleVisualizer.save_to_file');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#save_to_file">save_to_file</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">output</tt><tt class="py-op">=</tt><tt class="py-string">"output.png"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer.save_to_file-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="RectangleVisualizer.save_to_file-expanded"><a name="L45"></a><tt class="py-lineno">45</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">save</tt><tt class="py-op">(</tt><tt class="py-name">output</tt><tt class="py-op">)</tt>     </tt>
</div><a name="L46"></a><tt class="py-lineno">46</tt>  <tt class="py-line"> </tt>
<a name="RectangleVisualizer.getPNGImage"></a><div id="RectangleVisualizer.getPNGImage-def"><a name="L47"></a><tt class="py-lineno">47</tt> <a class="py-toggle" href="#" id="RectangleVisualizer.getPNGImage-toggle" onclick="return toggle('RectangleVisualizer.getPNGImage');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="dexen.user.schemas.cubes.tasks.libs.visualizer.RectangleVisualizer-class.html#getPNGImage">getPNGImage</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="RectangleVisualizer.getPNGImage-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="RectangleVisualizer.getPNGImage-expanded"><a name="L48"></a><tt class="py-lineno">48</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">save</tt><tt class="py-op">(</tt><tt class="py-string">"output.png"</tt><tt class="py-op">)</tt> </tt>
<a name="L49"></a><tt class="py-lineno">49</tt>  <tt class="py-line">        <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-string">"output.png"</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno">50</tt>  <tt class="py-line">        <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">read</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L51"></a><tt class="py-lineno">51</tt>  <tt class="py-line">        <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno">52</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">image</tt> </tt>
</div></div><a name="L53"></a><tt class="py-lineno">53</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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